Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------------MAVKIQTSAGTIEITNDVIATVVGGAATDVFGVVGMASKNQIKDNITEILR---KENYSRGVVVRQEDNGIAVDVYTIISYGTKI-------SEVSRNVQEKVKYNLEA-LLGVTANSVNVFVQGVRVLPD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5UFL Chain:A ((5-561))TACLKSLLLTVSQYKANATQLLRHLEVISRLFTSNQILTSECLSCLVELLEDPSASLILSIIGLLSQLAVDIETRDCLQNTLNSVLAGVVCRTDSVFLQCIQLLQKLTYNVKIFYSGANIDELITFLIDHIQSELKMPCLGLLANLCRHNLSVQTHIKTLSNSFYRTLITLLAHSSLTVVVFALSILSSLTLNEEVGEKLFHARNIHQTFQLIFNILINGDGTLTRKYSVDLLMDLLKNPKIADYLTRYEHFSSCLHQVLGLLNGKDPDSSSKVLELLLAFCSVTQLRHMLTQMMFESHTKCLEPTVALLRWLSQPLDGNCSVLALELFKEIFEDVIDAANCSSADRFVTLLLPTILDQLQFTEQNLDEALTRKKCERIAKAIEVLLTLCGDDTLKMHIAKILTTVKCTTLIEQQFTYGKIDLGFGTKVADSELCKLAADVILKTLDLINKLKPLVPGMEVSFYKILQDPRLITPLAFALTSDNREQVQSGLRILLEAAPLPDFPALVLGESIAANNAYRQQE


General information:
TITO was launched using:
RESULT:

Template: 5UFL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 386 -15320 -39.69 -127.67
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.51

3D Compatibility (PKB) : -39.69
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.51
QMean score : 0.147

(partial model without unconserved sides chains):
PDB file : Tito_5UFL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5UFL-query.scw
PDB file : Tito_Scwrl_5UFL.pdb: