Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------MNIWSILCLIWTLVAYVVAKRIYQKHPKLWLSPAISVPVLTIILMTIFGIS-----YQTYAEDTQWI--------------VNLLGPATVAFAIPIYRYRETIRKK---LGVLTIAIIVGMSVGVMTAYKMAQWFHFSPEVTNSLMARSI--STPFAMILAEDIHGSAALVSLFTV----ITGLVGMICGDAILAITKIRSNVA------------NGAALGNAAHGF-----GTVRAQQRNSEEGVIASLTMVIAGILMVLI-GPFAIHLWLLL----------------------------------------------------
4XNV Chain:A ((38-382))SFKCALTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPW--SGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR


General information:
TITO was launched using:
RESULT:

Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 670 -76012 -113.45 -334.85
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -113.45
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.141

(partial model without unconserved sides chains):
PDB file : Tito_4XNV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4XNV-query.scw
PDB file : Tito_Scwrl_4XNV.pdb: