Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MKKSSILFI----FILLLC-------IGLQYETIYYTDGSRSGAEYGL-----MGVSIFLALFYMIPAL---YFLFRIGKKWELPKKVLILSLLGGMFLSGWLSSFANTYIHDLLGVLFPDSPFLNAFESAIVA-------------PLVEE--------------------PLKLLPLVFVLALIPVRKLKFLFLLG-----IASGLG------FQMI---EDIGYIRTDLPEGFDFTISRILERIISGIASHWTFSGLAVV--------GVYLLYRAYKGQKVGKKQGLIV----
3WO4 Chain:B ((1-301))GPESCTSRPHITVVEGEPFYLKHCSCSLAHEIETTTKSWYKSSGSQEHVELNPRSSSRIALHDCVLEFWPVELNDTGSYFFQM-KNYTQKWKLNVIRRNKHSCFTERQVTSKIVEVKKFFQITCENSYYQTLVNSTSLYKNCKKLLLENNKNPTIKKNAEFEDQGYYSCVHFLHHNGKLFNITKTFNITIVEDRSNIVPVLLGPKLNHVAVELGKNVRLNCSALLNEEDVIYWMFGEENGSDPNIHEEKEMRIMTPEGKWHASKVLRIENIGESNLNVLYNCTVASTGGTDTKSFILVRKAD


General information:
TITO was launched using:
RESULT:

Template: 3WO4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 848 -33408 -39.40 -153.25
target 2D structure prediction score : 0.18
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -39.40
2D Compatibility (Sec. Struct. Predict.) : 0.18
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.002

(partial model without unconserved sides chains):
PDB file : Tito_3WO4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3WO4-query.scw
PDB file : Tito_Scwrl_3WO4.pdb: