Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence ---------------------------------------------------MEAGKVLQEVKALCADKKYEEAKSLIEKNKENLEEKYPIAQEFIELKQGTILHRFKHFFGITE--------------------------------------------------------------------------------------------------------------- 5UDF Chain:A ((13-223)) DRELKNRVLGMVPQATVSSTQILTDWPELVKRVENHPHVTGVAPFTQLQGMLTAQGQVAGIMVTGIDPKYEKNVSIIQNH----------------IVAGSLDSLKKGEFGIVLGKDMADSLGLRLNDSVTLVLPEATPSPAGVVPRFKRFKVVGIFSVGAEVDSMVGYIALYDASTLLRLPDGAQGVRLKLDDIFAAPQVADDIVKNLPSNFYATNWTYTNLFN

General information: TITO was launched using: RESULT: Template: 5UDF.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 62 69 1.10 1.46 target 2D structure prediction score : 0.28 Monomeric hydrophicity matching model chain A : 0.52 3D Compatibility (PKB) : 1.10 2D Compatibility (Sec. Struct. Predict.) : 0.28 1D Compatibility (Hydrophobicity) : 0.52 QMean score : 0.117

(partial model without unconserved sides chains): PDB file : Tito_5UDF.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5UDF-query.scw PDB file : Tito_Scwrl_5UDF.pdb: