Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVYIDPKHLELEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPMVGSTIPHEVIGAFSGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLGSNTPINVVRATVEGLKQLKRAEEVAELRGKSVEELIG
4B3M Chain:E ((4-151))---------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------


General information:
TITO was launched using:
RESULT:

Template: 4B3M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 766 -75392 -98.42 -509.40
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain E : 0.83

3D Compatibility (PKB) : -98.42
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.525

(partial model without unconserved sides chains):
PDB file : Tito_4B3M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4B3M-query.scw
PDB file : Tito_Scwrl_4B3M.pdb: