Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------------MTKNASSPGKRFMKLAGMTASIATKTVSNSIRNLTADEEQKLAAKTKLFQDI---GLQIADTLGEMKGAVMKVGQ----------IASQYKDIFPPEVAKAISKLQRQAPAMPFSAIQQQVERE-LGKPLNAAFKSFDEQPFAAASIGQVHKAVLP--NGQQVVVKVQYPGVDEACESDLKQVRLALRLMGVLKIDKKLQDQLFA--EIQDSLSAELNYEI-------EAQNLEVFKTFHSKLD---------DKIIIPTVY----KDYSSRRILTLSLEQGDSIETASSWPIEIRNTIGRRLIRALGQEMFFLKRFHCDPHPG---NFAFRQDGSVIIYDYGSVKTLSNEIVYSFKRLVNAARHE--------DIDLIETELL--ELHSLAEK----GKFPSDLYKLWIEVLLR-PLTTTYDFAENSSQHDGMLLVKKSLKY---WDVFKPSPDTLMVNRTISGHYWN-LIHLKVHDNLNDLFKELVPLSN------
3J9E Chain:D ((2-521))GKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGL-VQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSA--PWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPL


General information:
TITO was launched using:
RESULT:

Template: 3J9E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1684 21941 13.03 51.14
target 2D structure prediction score : 0.40
Monomeric hydrophicity matching model chain D : 0.67

3D Compatibility (PKB) : 13.03
2D Compatibility (Sec. Struct. Predict.) : 0.40
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.170

(partial model without unconserved sides chains):
PDB file : Tito_3J9E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3J9E-query.scw
PDB file : Tito_Scwrl_3J9E.pdb: