Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MTQYQPPHINRK-LNVQAWWLTALLISINVGLFIWQIISGV-DISDPAIKDALHWGADFTPLTFSGQPERLFTSMFFHFGIIHLLLNMWALYIFGNVAEALFGRLYFIGLYLLAGLFGSLLSSYI--NIQNGHELLQHF------DQSLLPHVSAGASGAVMGLGAALTVLSLFPPLPHQAYILDKKALLMIMAINLIFGFVATGINN-----AAHVGGMIMG-------ALLALIW---YLSYRTPFKSLL---KFLGLVGGL----FMTVGFYVYCNQLNSPLLPLW----HEVLIQNPEILP--------
3P4G Chain:A ((23-323))HSFDHYIGSAFDASNNNVAVTGNVSATLNVLAGDDKVSIDGNVEDVLVAANVAVLDMGTGNDQLYVAGDV----------LGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSG----IVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGTGNDIVRVQSQVWAEANISLGTGDDVLIVEHELHGTVAGNEGDDSIYLKFYTKEQYNNNSDLRNRVANFEHIRVSDGVVKGSPADFADY


General information:
TITO was launched using:
RESULT:

Template: 3P4G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1826 -99449 -54.46 -390.00
target 2D structure prediction score : 0.24
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -54.46
2D Compatibility (Sec. Struct. Predict.) : 0.24
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.160

(partial model without unconserved sides chains):
PDB file : Tito_3P4G.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3P4G-query.scw
PDB file : Tito_Scwrl_3P4G.pdb: