Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKMERNINMKKWQTCVLGAGSLLCLTACSGKSVTSEHQTKDEMKTEQTASKTSAAKGKEVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKELS
2H1B Chain:C ((3-129))---------------------------------------------------------GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVG----ESKIAVHNFMKSYGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMI--------


General information:
TITO was launched using:
RESULT:

Template: 2H1B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 598 -80598 -134.78 -634.63
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain C : 0.73

3D Compatibility (PKB) : -134.78
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.693

(partial model without unconserved sides chains):
PDB file : Tito_2H1B.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2H1B-query.scw
PDB file : Tito_Scwrl_2H1B.pdb: