Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTFLNKIHETATFLKEKGIAAPEFGLILGSGLGELAEEIENPVVVDYAEIPNWGRSTVVGHAGKLVYGELAGRKVLALQGRFHFYEGNPLEVVTFPVRVMKVLGCEGVIVTNAAGGI--GFGPGTLMAISDHINM---TGQNPLMGENLDDFGPRFPDMSRAYTPEYRATAHEVAKKL--NIKLDEGVYIGVTGPTYETPAEIRSYKTLGADAVGMSTVPEVIVAAHSGLKVLGISCITN---FAAGFQEELNHEEVVEVTERVKGDFKGLLKAILAEL
1LVU Chain:B ((11-282))-------QDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYE------HEEVLEAGKQAAQKLEQFVSLLMASI


General information:
TITO was launched using:
RESULT:

Template: 1LVU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1342 -92995 -69.30 -363.26
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain B : 0.83

3D Compatibility (PKB) : -69.30
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.610

(partial model without unconserved sides chains):
PDB file : Tito_1LVU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1LVU-query.scw
PDB file : Tito_Scwrl_1LVU.pdb: