Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKSEHRHQLIRALITKNKIHTQAELQALLAKNDIQVTQATLSRDIKNMNLSKVREEDSA---YYVLNNGS----ISKWEKRLELYMEDALVWMRPVQHQVLLKTLPGLAQSFGSIIDTLSFPDAIATLCGNDVCLIICEDADTAQKC---FEELKKFAPPFFFEE
3LAJ Chain:F ((20-170))-----GRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR----------


General information:
TITO was launched using:
RESULT:

Template: 3LAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 495 -29899 -60.40 -212.05
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain F : 0.78

3D Compatibility (PKB) : -60.40
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.511

(partial model without unconserved sides chains):
PDB file : Tito_3LAJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3LAJ-query.scw
PDB file : Tito_Scwrl_3LAJ.pdb: