Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSLLLKVRQNVP---QVQSIKTSLK-KRAGQKIPHMLSNASDLFFRGSEIALSGKTPFDVIYKHEIISLRHYRIETEASAHKHRVPLVIVPPLAVNMLIYDLFPTRSLIRYFLDQGFEVYLID---WGVPTRNQAKYNFG------TYVKVFMPEMLKQVRIHSGQQQLSLHGWSLGGALSLCYTALFKDKDIKNLMILASPIDTHKAGYMGKLYGSLTK-PAQWVRKHT-------PFRIRQHVPSE-VFHIHGWQNTLGFK-LTAPIGNLKTYWQLLKNLDNR-EFIVDHATSSSFIDNMLAYPGGVMRDIILRFWIDNELSTGVIKFGELTAYLKDIDCSVLAVGGDTDIIVTADAVKPLMDLISSQDKTFKTVPSGHMGVVSGSQAPTSVWPEMSNWLAMRSD
2RAU Chain:A ((3-354))YEEWKIVKREAPILGNDQLIENIWKMKRED-------------------------SPYDIISLHKVNLIGGGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRFYTPEVNSIEEMEAKGIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPY--------------RLSLERDLKFDYEGILVPTIAFVSER-----------------FGIQIFDSKILPSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQR-


General information:
TITO was launched using:
RESULT:

Template: 2RAU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1867 4262 2.28 13.07
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : 2.28
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.157

(partial model without unconserved sides chains):
PDB file : Tito_2RAU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2RAU-query.scw
PDB file : Tito_Scwrl_2RAU.pdb: