Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMTRSSHRKKSKHVALLSVLGVLLVLISFYTYRSTYYTKHFLPNTEINGINVSNLTVEKANEKLKEAYSDKKLAIKEDGKVWQEVPKSELGYKDDFTSELSPILNEQNGWTWGMTYVSAAEKQEIDPVSQNHQKLDTTVQTLTTKLTDLNKDRTPTTDATIEKAGDSFVIKPEVNGNTIDVDAAVKQLKSAVNSGKDTIELTEFKEKPKVTSEDSSLKEQLASMNAIANVKATYSINGETFQIPSSDIMSWLTYNDGKVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPIVQGGTTADHPLIEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDD-----GTPYESPVNYWMPIDWTGVGIHDSDWQP-EYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF
3VYP Chain:B ((112-239))----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEVIATADDNTKILTVRVNGEVVKSMPTSMGKDSTPTANGIYIVGSRYKHIIMDSSTYGVPVNSPNGYRTDVDWATQISYSGVFVHSAPWSVGAQGH----TNTSHGCLNVSPSNAQWFYDHVKRGDIVEVV


General information:
TITO was launched using:
RESULT:

Template: 3VYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 559 -2439 -4.36 -19.99
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain B : 0.59

3D Compatibility (PKB) : -4.36
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.634

(partial model without unconserved sides chains):
PDB file : Tito_3VYP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VYP-query.scw
PDB file : Tito_Scwrl_3VYP.pdb: