Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDLPNPVLAKVTERVIARSQKTRSAYLQRIEHAQGKFPARGALSCANLAHGFAGMEDNEKLIIKVGREPNIGIVSSYNEMLSAHAPYKTFPDIIKTAARENGGVAQF-AGGVPAMCDGITQGNASMELSLFSRETIAMGTAIALSHNMFDAALCLGVCDKIVPGLLIGALQFGYLPTIFVPAGPMSSGLSNDDKAKIRQQFATGQVGRDALLEAESAAYHGQGTCTFYGTANSNQMLMEVMGLHLPSAAFVHPHTPLRDALTAEAAKRVLDLTAEQGNYT---PIGHVIDEKAIINGIVALLATGGSTNHTLHLIAIAHAAGILIDWDDFDELSAVVPLLAKIYPNGKADVNHFQAAGGVAFLIRNLLEAGLLHNDVKTVAGKGL-QHYTKEPKLIDGKLTWVDGVVQSLDDKVLRSIDAPFQPDGGLRLMQGRLGRGVIKISAVAPEHRKVKAPAIVFDSQEAVQAAFDRGELHRDFIAVVRFQGARANGMPELHRLTPVLGVLQDQGFHVALVTDGRMSGASGKVPAVIHLSPEALLNGPIGKVQTGDMLIIDAEAGVLDIELDEQTWQSRPVAQPEHQAENEVGFGRELFGVFRAAAAPAEHGASVFGALVGEEPQGQI
2GP4 Chain:B ((0-604))--HMHSVVQSVTDRIIARSKASREAYLAALNDARNH-----------------------------------------------------------KACQEVGSV-AQVA--VP--CDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGIC-KIVPGLLIGALSFGHLPMLFVPAGP--------------------------------------------------QLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTE---LGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKL-LDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGRAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANGMPELHKLTPLLGSLQDKGFKVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLR-HSRYGMGRELFGVLRSNLSSPETGARSTSAI---------


General information:
TITO was launched using:
RESULT:

Template: 2GP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2885 -70000 -24.26 -144.03
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain B : 0.82

3D Compatibility (PKB) : -24.26
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.556

(partial model without unconserved sides chains):
PDB file : Tito_2GP4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GP4-query.scw
PDB file : Tito_Scwrl_2GP4.pdb: