Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNFKPLAYILLATSSLTACTMAP------VKEQKIEPFVFKEPELTPPFYALNPFNYDAPPAFE----VALKEA-AAQPVTKMVVTRQDDPTKTLTLDTNKLIVPTVNNSQRSMKYAVLAGDNEIDVTEID----DFLQLVEGKARHYPPRFTDR---------QERKGFESKLME--VTQRLDTLAAN-------PDASFDILIRAFKASVLARNLDLGTAHTTKSLEYAQRLLKINPD--------DAEANFW----------FGFGLSEGGGQREAIPYLDKAIKGNVQEAYLAAANNYIAMEQKKNAIQTLKNYKVKYP-----------DEAEVADRLIQE--IEKQG-----RWNVWQVLTNPAMSSATPSAATKK------------
5F9S Chain:A ((1-385))LLVTPPKALLKPLSIPNQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANG------IWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSG---SQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK


General information:
TITO was launched using:
RESULT:

Template: 5F9S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1578 72926 46.21 239.89
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : 46.21
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.175

(partial model without unconserved sides chains):
PDB file : Tito_5F9S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5F9S-query.scw
PDB file : Tito_Scwrl_5F9S.pdb: