Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------MGLNMPEPTSTTAATTTSLAA---VSLLPFINGNA---LLGAVLGAAFVAYLEKDLSAKQRIVFMLLCV------------GFGYLLGPEITSRTQYISSDATASMVAAIFAI-----YILI---KLLDWVKNSTLAQLWKTFRGGGNS---
2J9L Chain:A ((9-182))HKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIAQMANFNEFLEV


General information:
TITO was launched using:
RESULT:

Template: 2J9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 436 -27296 -62.61 -221.92
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : -62.61
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.264

(partial model without unconserved sides chains):
PDB file : Tito_2J9L.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2J9L-query.scw
PDB file : Tito_Scwrl_2J9L.pdb: