Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTNKNAYAQSGVDVEAGYEVVERIKKHVARTERAGVMGALGGFGGMFDLSKTGVKEPVLISGTDGVGTKLMLAIKYDKHDTIGQDCVAMCVNDIIAAGAEPLYFLDYVATGKNEPAKLEQVVAGVAEGCVQAGAALIGGETAEMPGMYGEDDYDLAGFAVGVAEKSQIIDGSKVVEGDVLLGLVSSGIHSNGYSLVRRVFADYTGEEVLPELEGKKLKEVLLEPTRIYVKAVLPLIKEE-LVNGIAHITGGGFIENVPRMFADDLAAEIDESKVPVLPIFKALEKYGQIKHEEMFEIFNMGVGLMLAVSPENVERVKELLDEAVYEIGRIVKKENESVIIK
5AVM Chain:C ((53-329))-------------------------------------------------------EPVLVATTDGVGTKTLLALEAGDVSGLGFDLVNHSVNDLLAQGAEPLFFLDYLAASHLDEGVLAALLASLAEACRAHGIPLLGGETAEMPGVYREGAWDIAGTLVGVVERSRILGPERVREGDALLALPSSGPHTNGYSLIRKVVAGQDLSAPVPE-LGESLKEALLRPHRAYLKEFRLLWEAGVELHAAAHITGGGLPENLPRALPPGLGAEVRRGSWPIPPVFPYLQRLGGIPEEEMYRVFNMGLGMVLVLPQEAAEEALKL--VEGFLVGRVVPGEG------


General information:
TITO was launched using:
RESULT:

Template: 5AVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1567 -108455 -69.21 -392.95
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain C : 0.77

3D Compatibility (PKB) : -69.21
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.511

(partial model without unconserved sides chains):
PDB file : Tito_5AVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AVM-query.scw
PDB file : Tito_Scwrl_5AVM.pdb: