Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKMKYYEETSALLHEFSEENQKYFEELWESFNLAG--FLYDEDYLREQIYLMMLDFSEAERDGMSAEDYLGKNPKKIMKEILKGAPRSSIKESLLTPILVLAVLRYYQLLGDFSKGPLLTVNLLTFLGQLLIFLIGFGLVATI--LRRSLVQDSPKMKIG--TYIVVGTIVLLVVLGY-VGMASFIQEGAFYIPAPWDSLSVFTISLV--------IGI-------------WNWKEAVFRPFVSMII----AHLVVGSLLRYYEWMGISNVFLTKVIPLAVLFI---------------GIFLLFRGFKKIKWSEVQSKSRCKAVFCYNEGKN----VRN------
4MFL Chain:A ((23-345))-----MDPETVRIALGLEERTAAWLTELDELGPPAEPVRLPRGEEARDLLRRL-------EVPELDAEEIVAAAPD----------PDRDPALWWLLERTHHAIVRH---MGDHRAKPRGGPPLPYEGGAAARYFHVYVFLATVPAVRRFHAERGIPDEVGWETLTQLGELVAIHRRKYGQGGMNMQWWTTYHLRGILYRLGRLQFSLATGKDGTPHLGLAVPEWGGPLLPKAYDESLHRARPFFDRHFPEHGARVAWGSSWMLDPQLEEYLTEDSNIIQLARFWTLTDSAPEPGNADGDSSILEFVFRYNGQPLDELPQRSSLERAVIAHLKAGRHWHMRTGFVKLP


General information:
TITO was launched using:
RESULT:

Template: 4MFL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1239 -84176 -67.94 -316.45
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -67.94
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.230

(partial model without unconserved sides chains):
PDB file : Tito_4MFL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MFL-query.scw
PDB file : Tito_Scwrl_4MFL.pdb: