Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGTRSKRAQDVLIGGRFRIQERLGGGAFGEVFRGVELNSGHPVAMKMELTKDGHRSHLNLENRIYKKFNECPVTVGIPKSYYCGRVGDYTVMVMDLLGPCLDDLFEVCHRKFSFKTVCMIGIQLIQRLQYLHSVGYLHRDIKPENFVMGVGANSHIVYVIDVGLSKAWRDSTGK-HILYAEGKSLTGTARYVSINTHRGIQQSRRDDLESVSYLLAYFARGNLPWQGLKSPKRDARFERIRDVKTATSPAELCKGYPRQLADYIEYTRSLGFEAEPDYSYCVGLFSSAMADMGEQYDYCYQWIDRSEAEVKAASDARGSAHSLRTSGAQTSVAVGGSNLMTSSVFVGDSAVNEMSKSLLNSNFMEEIQDYYGLNDYI
5FQD Chain:F ((14-305))---------EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKAR-HPQLLYESKLYKILQGGV---GIPHIRWYGQEKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNHQYDYTFDWTML------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5FQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 1452 -109797 -75.62 -377.31
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain F : 0.78

3D Compatibility (PKB) : -75.62
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.524

(partial model without unconserved sides chains):
PDB file : Tito_5FQD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5FQD-query.scw
PDB file : Tito_Scwrl_5FQD.pdb: