Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------------------------------------------------------PPKYTTMCMVHVATPWDPTGNQMKYQKKAPSKLELHLWDNTKDASDVYRGFPNGACEVQMEKEFPSGYRRAGTILLTPMTDTGAPGRYLHGKSCVPRPNFRPTCARALAARLWQIACIAALEGFYKV---------------------------------------
1BD3 Chain:A ((20-243))QEESILQDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAE-----------PKLIYEKLPADIRERWVMLLDPMCATA--GSVCKAIEVLLRLGVK-------EERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM


General information:
TITO was launched using:
RESULT:

Template: 1BD3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 200 -2245 -11.22 -20.98
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : -11.22
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.134

(partial model without unconserved sides chains):
PDB file : Tito_1BD3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1BD3-query.scw
PDB file : Tito_Scwrl_1BD3.pdb: