Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSEQQPKFEIRDEEQLSVDLIEAQYALKESRGKPNAKSTLILMSGIELAGKGEAVKQLREWLDPRYLRVKADAPRVLTDSEAFWQSYSAFIPTEGQIVVMFGNWYSDLLVTATHVSEPLDDARFDAYVENMRAFEQDLKNNYVDVIKVWFDLSWKSLQKRLDKIDPSEQHWHKLHGLDWRNKKQYDTLQKLRRRFTDDWYIIDGEDEKQRDQFFAQYLLQHMRQLPEHETEVKGKWQQAKIPESLLKPAQEKMDKAEYKKELDKLSKKIADTMRFDKRNVVIAFEGMDAAGKGGAIKRIVKNLDPREYDIHCIGAPERFEARHPYLWRFWNRINEAEKITIFDRTWYGRVLVERVEGFASPIEWQRAYDEINSFEKDLFDSQTIVVKIWLAISKDEQEQRFKAREETPHKRFKITAEDWRNRDKWDDYLKAAADMFERTSTEYAPWYIVATDDKYTARLEVLRAILKQLRAD
5LCD Chain:C ((78-250))---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLVVLQAMDAGGKDGTIRVVFDGVNPSGVRVASFGVPTEQELARDYLWRVHQQVPRKGELVIFNRSHYEDVLVVRVKNLVPQQVWQKRYRHIREFERMLADEGTTILKFFLHISKDEQRQRLQERLDNPEKRWKFRMGDLEDRRLWDRYQEAYEAAIRETSTEYAPWYVIPAN--------------------


General information:
TITO was launched using:
RESULT:

Template: 5LCD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 695 -66858 -96.20 -386.46
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain C : 0.67

3D Compatibility (PKB) : -96.20
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.530

(partial model without unconserved sides chains):
PDB file : Tito_5LCD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5LCD-query.scw
PDB file : Tito_Scwrl_5LCD.pdb: