Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRAKIDDENSSVAVTLLPSAQVEPLASSQPPTRTGAVGTMVNTDAIDARGNDAESSGGGSAPSSMATTTTINAVFYNPSAQLPTPPPLHRNSSSPAPMQHLQHEEPQRLRAVPYFPASCESDSNEEPLFQHPPPAKPRAPLRPAPQSGRLWGAVSATPSSAGFVSGGTAPYASLLHTSSAPAVADTETSSTTAGHGLVVGCETSNHCLPASIKAHPPASATSPASIHGGYSDSVSDSTATTTVGNHSSGGRGLRRPPLMTGPNGAAVPLASPMLSGPQGRWVRSSGDESSSGFATLAVPAAPANLGDTVLVAEPPTPTKQRRTIHTGMGNTVSLSCGGIGAAPRLSTSAAASTGTCASAAAATSAAAVAGGASPKPSLRIAAPFRGLGYNPAANSVSAPASRATTSSMSTAPPPPSFKCYRREGSRKRSADVLSQFSALDLDETPATPFAQTGTSRFTSINHNGNGHNAFPSQPSPSTAVYRGAGGGSNAISTVSPLTIDYATPVALSQQIGGSNTFSQVLLHPSQDVLDMSQAETECSNFLARRILKEYNEVRLLGSGSFGTVSLFKEISSGEYVAVKMSPPLRT-PEMERRYRRERSVMGMVRGLPHVVQLSAAWEEGRVPRMYLQLEYCPGGSVASVANAKQSRNEPWPEAEVKVFLAHMSIALDALHRANIAHVDFKPDNVLVDKDGAYKLSDFGCSVLLDERGRPRPETRNGYGSLARGQRAGWVGGVACANPNGGPAVHTGAGVGAGGLGSSLDFNNWNEGNELSTMSIDEGDCRYLCADMLNEKQHFKAGDMFSLGMSLFELMSGQPLPRNGDQFLALRRRVPVEVLRRRGYSADLVELVVALLRSDPPQRPTARQVLQYLRLSSEELQLLSSASAMKRWTESAESFLQLQEEERQQPPLGKDGVLAATVDALRCVSALMEASMWLFTTTQQDVHRLAAPANAGKGEDEEDERRRQQTQQPQPQPLLQLPRGQQLEDLPMSPIQCDEACTPTALNY
5VCY Chain:A ((56-309))------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGG--ILYLQTELC-GPSLQQHCEAWG---ASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA---------------------------------------------------------------GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLP-PEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLR------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5VCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1228 -46379 -37.77 -183.32
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : -37.77
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.553

(partial model without unconserved sides chains):
PDB file : Tito_5VCY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5VCY-query.scw
PDB file : Tito_Scwrl_5VCY.pdb: