Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------MIFATSQVNPLTNSSVRNLRPKQRRLFMFWNLVHYEFK-----NVNKWYLALYAAVLVLSALIGI-QTQGFKNLPYQESQATMLLFLATVF--GGLMLTLAISTIFLIIKRFKGSVYDRQG---YLT-----LTLPVSEHHIITAKLIGAFIWSLISTAVLALSAVI---------ILALTAPEWIPLSYVITFVETHLPQIFLTGISFLL-NTISGILCIYLAISIGQLFNEYRTALAVAVYIGIQ-----IVIGFIELFFNLSSNFYVNSLVGLNDHFYMGAGIAIVEELIFIAIFYLGTYYILRNKVNLL-----------------------------------------------------------------------------------------
4OFZ Chain:A ((85-513))QTVDDFKNLMYKMQETRRAIVFALLNEKDLTKDDVEILKRAYEKLTDNFQREMCTLTTKLSVNIGDETRGLEKDLKYLDALMNIRREEPNLLWPIIMSRVDLFSILANYHPKGKETFLKEYEDTVKFLKTFISSEAITGKKPIFITDWDGTMKDYCSQYATNLQPVYSAVGMTRFAASFTRISAVLTAGPLRGPGILDLTA---MPIDGPVMFSGSWGREWWLSGKRVVHQDGITDEGFNALQRLDDEMKDLLHTSPFALVGSGVQRKVDRLTLGVQTVCHHVTSELSNRYQMAVKERMHNSQILVFDPSTELEVEVVAHNSGIIWNKGNGVERLIKSLGDSLQSPGKILICGDTLSDIPMVRQAVKQNPDGVLAIFVGAKMSLREEVKQVIGDESRCCFVSCPDVIHAAMSQILNEHCIG


General information:
TITO was launched using:
RESULT:

Template: 4OFZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1156 -88264 -76.35 -316.36
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -76.35
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.123

(partial model without unconserved sides chains):
PDB file : Tito_4OFZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OFZ-query.scw
PDB file : Tito_Scwrl_4OFZ.pdb: