Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKQFAVIGNPIEQSRSPELHHAFAEKTGVDLNYQKRLAPLDGFESSMRSFFAEGGSGMNVTVPFKEQAFALCNVLTERAQIAKAVNTLW-MENGKLHGDNTDGQGLVAAIQALEWNLENTTILILGAGGATRGVIYPLVQAGAKKIVIANRTLARAEQLVDDLKTAVPQAQLQAISLNDLEG-DFDIVINATSASLSGDALQLPEKLKFK--YAYEMAYGK-PSSFLDQAKQRNVPY-AEGFGMLVGQAIEAFSIWNGVRPQLKDFL
1NYT Chain:B ((2-260))--ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA---KLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVE---


General information:
TITO was launched using:
RESULT:

Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1440 -57639 -40.03 -227.82
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain B : 0.83

3D Compatibility (PKB) : -40.03
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.543

(partial model without unconserved sides chains):
PDB file : Tito_1NYT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NYT-query.scw
PDB file : Tito_Scwrl_1NYT.pdb: