Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSARHSRLIILGSGPAGYSAAVYAARANLKPTLIAGLQL-----GGQLTTTTEVDNWPGDPEGLTGPVLMDRMQAHAERFGTELVYDHINEVDLNVRPFVLKGDMDE----YTCDALIIATGATAQYLGLESEQKFMGQGVSACATCDGF--FYKNQNVMVVGGGNTAVEEALYLSNIAEHVTLVHRRDSLRSEKILQDHLFAKEKESKISIVWNHEVEEVLGDNTGVTGVRLKSTKDDSKQEVQVQGLFIAIGHKPNTSMFEGQLNLRD-GYIQVQSGTSGNATATSVAGVFAAGDVADSIYRQAITSAGSGCMAALDAEKYLDNL
3ITJ Chain:D ((22-337))----HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------R---AEKNEKIEILYNTVALEAKG----LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSS----LTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL


General information:
TITO was launched using:
RESULT:

Template: 3ITJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1790 55511 31.01 188.81
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain D : 0.84

3D Compatibility (PKB) : 31.01
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.533

(partial model without unconserved sides chains):
PDB file : Tito_3ITJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ITJ-query.scw
PDB file : Tito_Scwrl_3ITJ.pdb: