Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------MKKITALLFALCATVTHAELQTLDNDALQAIN-GQAGADLSLM----LNLNQTSNGIFDNGSG-----------GVCENVEFCH-IGLAINKRFVQADTT-KPSGWAENSDSGNKLWLVFKGVQGTLNIQKMGLDGADLKYLDKSNTEIIKLAIQLSFSAAQPILIRNFG--FNALSIEQDNFTSSTTTQGSSANMYDYAYFKKPTYAATANSANQQVATATPSAYDYGRETGFMG-------------LMMNGNMAIQ--GKVMVFSC----DGSHPRC--------------------------------------------------------
4QVG Chain:A ((4-344))ELSALVPVLFGHAAFQQLNAGCQLGLFELLHERGPLSAEEVADALRLPRRSADILLLGTTALGLSTVTDGGYRNGAPIGAAFRDGLWPVLRDIVQYQDKIAYQPAADYVESLRTGQNAGIRHFPGTTRDLYSRLAAVPGLEELFYRGMHA----WSQLSNPVLLA---QPDFTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDRPGALEVARKTIAE--AGLEERVRTHAADIFTDSYPAGHDCVLFAHQLVIWSPEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTTLPFRHSTIHRWADCESWLREAGFTDVGRTAPPGWTPHGVVSGSRPR


General information:
TITO was launched using:
RESULT:

Template: 4QVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 843 18312 21.72 78.93
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 21.72
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.114

(partial model without unconserved sides chains):
PDB file : Tito_4QVG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4QVG-query.scw
PDB file : Tito_Scwrl_4QVG.pdb: