Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEDQYVQAMTIAGSDSDGSAGMQADMHTFFTRNVYGVSVMTACVAGNSYGIGASVT-LPTDFIDKEFELIAKDFQIRAAKTGMLADSKLIETVVKNYQKYDFGPLVVDPVIVTKHGNLLLEESALQSLKEKLVPLAEVLTPNFYEAEKLTGR-TLAAEEDFVQAAKELQDMGAKNVMIKGHHAKNAQQETVNDYVLFESGKSFW-LNAPFYPTDRINGTGDSLSACIAAELAKGKTVEQAIRLAKDYVNRAIREEINVGHKYGPINHWAAGELE
4C5N Chain:D ((5-267))------KVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDVFEKQLE-TALSIGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVC-------NPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKS----YDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIE


General information:
TITO was launched using:
RESULT:

Template: 4C5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1576 10680 6.78 42.21
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain D : 0.78

3D Compatibility (PKB) : 6.78
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.497

(partial model without unconserved sides chains):
PDB file : Tito_4C5N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4C5N-query.scw
PDB file : Tito_Scwrl_4C5N.pdb: