Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKQEMMEIVQQKQLAPKIFEMTLKGDLVKEMQQPGQFLHILVPRADLLLRRPISLNHIDHETNTCRIIYRVEGEGTRVFS-TLSAGDHL-DVMGPLGNGFDLSNLHTGDEVFIIGGGIGVPPLYELSKQLVEKGIKPTHFLGFATHEVVYYEKEFNRL-GETRIAT---D--DGTYGMH----GNVGNLLLGTK--TEPTAVFACGSNGLLKTVEQLFSSH-QNVQLSLESRMACGIGACYACVCHTPEDETGTKSVKVCDEGPIFKIGEVII
5VJ7 Chain:B ((1-258))----MYKILEKKEIAMRNTWYKVYAPHVAKKVQPGQFVIVRAFP--NGERIPLTPVMWDREEGWIVLIVFTRGKTTMRMAVELKEGDSLLNVAGPLGTPVPMEK---FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTF-EPMVILKEELEKAVTRHIVEPVPLNPNQDFLAN-KNVSQRLKEKVRELLESEDWDLVFMVGPVGDQKQVFEVVKEYGVPMKVDLHPIMVDGTGMCGACRVTV-GG----EVKFACVDGPEFDAYQVDW


General information:
TITO was launched using:
RESULT:

Template: 5VJ7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1260 -60252 -47.82 -248.98
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -47.82
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.449

(partial model without unconserved sides chains):
PDB file : Tito_5VJ7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5VJ7-query.scw
PDB file : Tito_Scwrl_5VJ7.pdb: