Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTYLPVALTIAGTDPSGGAGIMADLKSFQARDVYGMAVVTSLVAQNTRGVQLIEHVSP---QMLKAQLESIFSDIPPQAVKTGMLATTEIMEIIQPYLKKLDCPY-VLDPVMVATSGDALIDSSARDYLKTNLLPLATIITPNLPEAEEIVGF-SIHDPEDMQRAGRLILKEFGPQSVVIKGGHLKGGAKDFLFTKNEQFVWE--SPRIQTCHTHGTGCTFAAVITAELAKGKSLYQAVDKAKAFITKAIQDAPQLGHGSGPVNHTTFKD
4C5N Chain:C ((3-264))---LKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKD--TWSHDVTPLPMDVFEKQLETALS-IGPDAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVM---------NPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDK-GAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYN-


General information:
TITO was launched using:
RESULT:

Template: 4C5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1487 3131 2.11 12.73
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain C : 0.79

3D Compatibility (PKB) : 2.11
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.442

(partial model without unconserved sides chains):
PDB file : Tito_4C5N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4C5N-query.scw
PDB file : Tito_Scwrl_4C5N.pdb: