Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLFSGSSMSEQIFIQGPVGKIELFVDRPEGEI-KGFAVVCHPHPLQGGTPQHKVPALLTQIFNEYGCIVYRPSFRGLGGSEGVHDEGHGETEDILAVIEHVRKLHAGLPFYAGGFSFGSHVLAKCHAQLSPELQPVQLILCGLPTATVVGLRHYKTPEIQGDILLIHGEQDDITLLSDAIEWAKPQKHP--ITILSGANHFFTGYLKQLRQIITRFIIMK
3TRD Chain:A ((1-208))---SYVMTNEDFLIQGPVGQLEVMITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLAGFSFGAYISAKVAYDQKVA----QLISVAPP---VFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFHGRLIELRELLVRNLA--


General information:
TITO was launched using:
RESULT:

Template: 3TRD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1225 -59457 -48.54 -290.03
target 2D structure prediction score : 0.77
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -48.54
2D Compatibility (Sec. Struct. Predict.) : 0.77
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.630

(partial model without unconserved sides chains):
PDB file : Tito_3TRD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3TRD-query.scw
PDB file : Tito_Scwrl_3TRD.pdb: