Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSGSTITPWVVGNWKMNPMRANANQLIEEFKQLLQQNQIADENCHVGVAPVSIALTTVQAQLQDAARTVYTVAQDVSRVAGTGAYTGEVSAELLKDSQINFVLVGHSERRDIFGDNVEILKAKLQNALNAGMTVIYCVGESLEQREQGQAEQVVLQQICDIAPVVTAEQWQNQVVIAYEPIWAIGTGKTASPQDAQAMHAKIREGLCQLTPAG--SNIAILYGGSVKAENAVELAACPDINGALVGGASLNAASFYQIVQAFAQSK
5CG7 Chain:B ((27-269))-------PIVAANWKCNGTTAS----IEKLVQVLNEHQI-DHDVQCVVAPSFVHIPMVQAKLNPK----YAVSAE-NAIAKSGAFTGEVSMPILKDLGVSWVILGHSERRTYYGETDGVVAQKVADAYNQGFMVIACIGETLQQREANQTAKVVLSQTAAIAAKLPKEAW-SQIVLAYEPVWAI---KVATPEQAQEVHALLRQWVSEKIGNGVATKLRILYGGSVTAGNAKTLYMKPDINGFLVGGASLK-PEFRDIIDA-----


General information:
TITO was launched using:
RESULT:

Template: 5CG7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1257 -123489 -98.24 -521.05
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -98.24
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.588

(partial model without unconserved sides chains):
PDB file : Tito_5CG7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CG7-query.scw
PDB file : Tito_Scwrl_5CG7.pdb: