Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMATP------------FWYNTALHLLKPFYRWRIKRRAESLELYQQECLERFGPFEAP-KNVKAIWFHAVSVGETNAAQPLIEYYLKL-GQPVLVTNTTKTGQARAKSLFLKEPYLDLFQAVYLPVDQKPLLKKFFELY-QPKLLALVETELWPNLI---DQAKLQHVPCLLLNARLSEKSAKGYGKVSGLTAGMLKQLDWVLAQDSATRQRYVELGLDEHKSQVVGNIKFDIHAPEAFIKQAAQLRQQ-WYLENRQVVTIASTHAPEEQQ-ILEAFAPYLNSDRELVCIVVPRHPERFDEVFEICQNLNLITHRRSMGQSIHASTQVYLADSMGELWLWYALS-QVCFVGGSLNEPGGGHNILEPMVLNVPTVVGPRYFNFQTIVDEFIDENAVLIAQDAQQVVDIWLACLAEPEATEQLVAQAHKVLQRNQGSLQKHIGVINRYLAEKS
4RAP Chain:A ((10-391))ITPPDTPTQAGPENIFYDFNDGARVLLPEGKWHVRLLDADSENILFCCDVDKGWVTSSKKYFVRFRIQVFRQGAT----PLLDETLKLKDRPVLISFPTGT----LGDLLGWFPYAERFQSLH---------KCRLECTMSQDIIDLLAPQ-YPQIQFSTPDKPRTVAPYATYRVGLYFGGDTNNQPVDFRKVGFHRSAGYILGVDP--REAPVRLDLSAPRV---------IAAPYVCIATQSTCQAKYWNNGTGWSEVIAHLKSLGYRVMCIDRDAHY---GQGFVWNHIPWGAEDFTGKLPLQERVNLLRH-----------ASFFIGLPSGLSWLAWATRIPVVLISGF---------SLPNSEFYTP----WRVFNSHGCYGCWDDTSLNFDHHDF-----LWCPRHKNTDRQFECTRLI---------TGAQVNGVINKLHRSLT


General information:
TITO was launched using:
RESULT:

Template: 4RAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1945 -8392 -4.31 -23.31
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -4.31
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.253

(partial model without unconserved sides chains):
PDB file : Tito_4RAP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4RAP-query.scw
PDB file : Tito_Scwrl_4RAP.pdb: