Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSKCWHDSICPFLIFKINRELLMSNSHVDVIVLGAGASGLMLAAHAAKRGRSVLILEKANKIGKKILMSGGGKCNFTN--LYVEPENYISHNPHFVISALSRYSNWDFIGLVCDYGIAYEERKHGQLFTLNGAK----EILEMLVSECNKT--NNVEIQTHCKVGEIDLLEQGGFSVHTNQGRFSCESLVVATGGLSIPTLGGSGFGYELAQKFGHTVFPTRAGLVPFTFSDHIKEVTTRLSGNALDVTLTNSKNSFTEALLFTHRGLSGPSSLQLSNYWNTGESFKIDFFP---SQDLATYLKDKKKAQPKVLLRTLLNEFTAKSIVQELQQLIWPEQSETPIGNISDAQLEHIAEQLHGFTVKPSGTEGYRTAEVTLGGIDTTEVSSKTFESKKQKGLFFIGEVLDVTGHLGGYNFQWAWSSAYAAAQYV 4CNJ Chain:A ((2-386)) -------------------------NHFDTIIIGGGPAGMMATISSSFYGQKTLLLEKNKRLGKKLAGTGGGRCNVTNNGNLDDLMAGIPGNGRFLYSVFSQFDNHDIINFFTENGVKLKVEDHGRVFPVTDKSRTIIEALEKKIAELGGTVITNTEIVSVKKTDEL-------FTVRSSDQAWTCQKLIVTTGGKSYPSTGSTGFGHDIARHFKHTVTDLEAAESPL-LTDFPHKALQGISLD--DVTLSYGKHIITHDLLFTHFGLSGPAALRLSSFVKGGETIYLDVLPQMSQQDLADFLEEHREKSLKNCLKILLPERIADFFTQP-----FPEK----VKQLNLSEKEALIKQIKELPISVTGKMSLAKSFVTKGGVSLKEINPKTLESKLVPGLHFAGEVLDINAHTGGFNITSALCTGWVAG---

General information: TITO was launched using: RESULT: Template: 4CNJ.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2095 27384 13.07 73.22 target 2D structure prediction score : 0.51 Monomeric hydrophicity matching model chain A : 0.76 3D Compatibility (PKB) : 13.07 2D Compatibility (Sec. Struct. Predict.) : 0.51 1D Compatibility (Hydrophobicity) : 0.76 QMean score : 0.478

(partial model without unconserved sides chains): PDB file : Tito_4CNJ.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4CNJ-query.scw PDB file : Tito_Scwrl_4CNJ.pdb: