Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVNMTRYVLELNKNIRTFLKMQLNPIYYNEQHIAFADNVRRFVQKEMTPFVNEWDEAETFPRELYKKAAEIGLLGLGFSEEYGGIPDADPFYSLLAGIEMAKAGS-GGVHISLMVHTIGAPPIQHFGSEELKARVLPGIISGEKISALAITEPGGGSDVAALQTKAVRDGDYYIVSGEKTFITSGIRADYYTVAVRTDPTKTGAEGISMLLIDAHSEGITKT-PLKKMGWWASDTAHLHFDQVRVPASNLLGKENAGFKVIMNNFNMERFFLGVVAYGYALVCYEEALEWVQQRKTFGKRLIDHQVVRHKLVDMATQLTSTRALLEETAWKMTQPKLQG-PELVAQISMLKNVATRTMQFCADAAVQTLGGMGFMRGTKSERIYREVKVNMIGGGAEEIMKDLISKQLGY
3P4T Chain:A ((24-401))-------------------------IWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICE-EMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG--GPGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRH----VVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTLGF


General information:
TITO was launched using:
RESULT:

Template: 3P4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2135 -53327 -24.98 -142.21
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -24.98
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.521

(partial model without unconserved sides chains):
PDB file : Tito_3P4T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3P4T-query.scw
PDB file : Tito_Scwrl_3P4T.pdb: