Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPGRSCVALVLLAAAVSCAVAQHAPPWTEDCRKSTYPPSGPTYRGAVPWYTINLDLPPYKRWHELMLDKAPVLKVIVNSLKNMINTFVPSGKIMQVVDEKLPGLLGNFPGPFEEEMKGIAAVTDIPLGEIISFNIFYELFTICTSIVAEDK--KGHLIHGRNMDFGVFLGWNINNDTWVITEQLKPLTVN--LDFQRNNKTVFKASSFAGY----VGMLTGFKPGLFSLTLNERFSINGGYLGILEWI-LGKKDVMWIGFLTRTVLENSTSYEEAKNLLTKTK------------ILAPAYFILGGNQSGEGCVITRDRKESLDVYELDAKQGRWYVVQTNYDRWK----------H-------P--FFLDDRRTPAKMCLNRTSQ---------------ENISFETMYDVLSTK----PVL------NKLTVYTTLIDVTKGQFETYLRDCPDPCIGW
4WL2 Chain:C ((1-296))----------------------------------------------------------------------------------------------------------------------------------------------CTRFVYLDPHNPDYPITARSMDWADDTE----TNLWIFPQELKRSGGAGQYSLEWTSKYGSVIASAFDGRKGMASTTDGVNEKGLAANVLWLAE--SEY---PKTKPTAKKPGLSVAAWAQYVLDNFATVDEAVKSLQQEKFILVTKQVEGQKRLATLHLSLS-DSSGDSAIIEYIDGKQ-VIHH-----SKNYQVMTNSPTFDQQLTLNAYWDQIGGNVMLPGTNRAADRFVRASFYVKNVNPNKLIPGVAEKGKIEKDKADLATAFSIIRNASVPYGYSLPDMPNIASTRWRTVVDHKSLQYFFESAVSP------


General information:
TITO was launched using:
RESULT:

Template: 4WL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1200 39873 33.23 172.61
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain C : 0.57

3D Compatibility (PKB) : 33.23
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.345

(partial model without unconserved sides chains):
PDB file : Tito_4WL2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4WL2-query.scw
PDB file : Tito_Scwrl_4WL2.pdb: