Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMTRFEIRDDFYLDGKSFKILSGAIHYFRIPPEDWYHSLYNLKALGFNTVETYVAWNLHEPREGEFHFEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLT-KNMRIRSSDPAYIEAVGRYYDQLLPRLVPRLLNNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQ-GSINLYMFHGGANFGFMNGCSARGTLDLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLE-PLYKESMELDAIPLVEKVSLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAEEERLRIIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLHFLLNWKHYPLPLDNPEKIDFSKGWTQGQ-PAFYAYDFTVEEPKDTYLDLSEFGKGVAFVNGQNLGRFWNVGPTLSLYIPHSYLKEGANRIIIFETEGQYKEEIHLTRKPTLKHIKGENL
4MAD Chain:A ((15-595))MSQLTYDDSFLLDGKEIRLLSGAMHYFRTVPEYWEDRLLKLKACGFNTVETYVAWNLHEPEEGQFVFEGIADIVRFIKTAEKVGLHVIVRPGPFICAEWEFGGFPYWLLTVPNIKLRCFNQPYLEKVDAYFDVLFERLRPLLSSNGGPIIALQIENEYGSFGNDQKYLQYLRDGIKKRVGNELLFTSDGPEPSMLSGGMI--EGIFETVNFGSRAESAFAQLKQY----QPNAPLMCMEFWHGWFDHWGEEHHTRSAESVVETLEEILKQNGSVNFYMAHGGTNFGFYNGANHNETDYQPTITSYDYDGLLTESGDVTEKFYAVRKVFEK-YVDLPELNLPAPIPKRLFGKVKFTEHAGLLDSLHRISTPQKSEAPLPMEKYGQAYGFIVYETTIKGAYGKQALTVQDIHDRGQVYVNGEYVGIVERNRGCSRLVVELTEEE-SKLQIIVENMGRINYG-PFVVD--YKGITEGVRLGNQFLFDWTVYPLPLKDLSSLEFTADEVKENFPYFHKGILTVDKAADTFIDLSEWTKGVVFVNGHHLGRYWEIGPQQTLYVPAPFLQEGENEIILLELH-KHHQSVTFVDTPVLGA------


General information:
TITO was launched using:
RESULT:

Template: 4MAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 3615 -20890 -5.78 -36.20
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.83

3D Compatibility (PKB) : -5.78
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.530

(partial model without unconserved sides chains):
PDB file : Tito_4MAD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MAD-query.scw
PDB file : Tito_Scwrl_4MAD.pdb: