Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKMERNINMKKWQTCVLGAGSLLCLTACSGKSVTSEHQTKDEMKTEQTASKTSAAKGKEVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKELS
4HQZ Chain:A ((47-187))--------------------------------------------------------VGKDAPDFTLQSMDGKEVKLSDFKGKKVYLKFWASWCGPCKKSMPELMELAAKPDRDFEILTVIAPGIQGEKTVEQFPQWFQEQGYKDIPVLYDTKATTFQAYQIRSIPTEYLIDSQGKIGKIQFGAISNADAEAAFKEMN


General information:
TITO was launched using:
RESULT:

Template: 4HQZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 664 -62119 -93.55 -440.56
target 2D structure prediction score : 0.75
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -93.55
2D Compatibility (Sec. Struct. Predict.) : 0.75
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.689

(partial model without unconserved sides chains):
PDB file : Tito_4HQZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HQZ-query.scw
PDB file : Tito_Scwrl_4HQZ.pdb: