Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKSEHRHQLIRALITKNKIHTQAELQALLAKNDIQVTQATLSRDIKNMNLSKVREEDSAY-YVLNNGSISKWEKRLELYMEDALVWMRPVQHQVLLKTLPGLAQSFGSIIDTLSFPDAIATLCGNDVCLIICEDADTAQKCFEELKKFAPPFFFEE
5CJ9 Chain:A ((3-131))------RHIKIREIIANNDVETQDELVEQLKAAGYNVTQATVSRDIKELHLVKVPMMDGRYKYSLPADQRFNPLQKLKRGLVDSFVSIDRTDNLIVMKTLPGNAHAIGALIDNLDWTEIMGTICGDDTILIICKD----------------------


General information:
TITO was launched using:
RESULT:

Template: 5CJ9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 454 -52712 -116.10 -411.81
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.77

3D Compatibility (PKB) : -116.10
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.495

(partial model without unconserved sides chains):
PDB file : Tito_5CJ9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CJ9-query.scw
PDB file : Tito_Scwrl_5CJ9.pdb: