Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDKPIRPEKEELKEKLSPMAYAVTQENATERPFSGKYDDFYEKGIYVDIVSGEPLFSSAEKYDAGCGWPSFSKPITKRQVREKADFSHGMHRIEVRSKEADSHLGHVFTDGPVDQGGLRYCINSASLKFIPYEKMDELGYGEFKSLVE
1L1D Chain:A ((10-151))-----KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLEQMDAAGYGALKGEV-


General information:
TITO was launched using:
RESULT:

Template: 1L1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 730 -40970 -56.12 -288.52
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.88

3D Compatibility (PKB) : -56.12
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.459

(partial model without unconserved sides chains):
PDB file : Tito_1L1D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1L1D-query.scw
PDB file : Tito_Scwrl_1L1D.pdb: