Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDLPNPVLAKVTERVIARSQKTRSAYLQRIEHAQGKFPARGALSCANLAHGFAGMEDNEKLIIKVGR-EPNIGIVSSYNEMLSAHAPYKTFPDIIKTAARENGGVAQFAGGVPAMCDGITQGNASMELSLFSRETIAMGTAIALSHNMFDAALCLGVCDKIVPGLLIGALQFGYLPTIFVPAGPMSSGLSNDDK-------AKIRQQFATGQVGRDALLEAESAAYHGQGTCTFYGTANSNQMLMEVMGLHLPSAAFVHPHTPLRDALTAEAAKRVLDLTAEQGNYTPIGHVIDEKAIINGIVALLATGGSTNHTLHLIAIAHAAGILIDWDDFDELSAVVPLLAKIYPNGKADVNHFQAAGGVAFLIRNLLEAGLLHNDVKTVAGKGL-QHYTKEPKLIDGKLTWVDGVVQSLDDKVLRSIDAPFQPDGGLRLMQGRLG--RGVIKISAVAPEHRKVKAPAIVFDSQEAVQAAFDRG--ELHRDFIAVVRFQGARA-NGMPELHR---LTPVLGVLQDQGFHVALVTDGRMSGASGKVPAVIHLSPEALLNGPIGKVQTGDMLIIDAEAGVLDIELDEQTWQSRPVAQPEHQAENEVGFGRELFGVFRAAAAPAEHGASVFGALVGEEPQGQI
5J85 Chain:A ((13-579))------------K---------AEWPRKLRSQEWYGGTSR---DVIYHRGWLKNQGYP-HD---LFDGRPVIGILNTWSDMTPCNGHLRELAEKVKAGVWEAGGF-PLEVPVFSASENTFRP-----TAMMYRNLAALAVEEAIRGQPMDGCVLLVGCD-TTPSLLMGAASC-DLPSIVVTGGPMLNGYFRGERVGSGTHLWKFSEMVKAGEMTQAEFLEAEASMSRSSGTCNTMGTASTMASMAEALGMALSGNAAIPGVDSRRKVMAQLTGRRIVQMVK---DDLKPSEIMTKQAFENAIRTNAAIGGSTNAVIHLLAIAGRVGIDLSLDDWDRCGRDVPTIVNLMPSGKYLMEEFFYAGGLPVVLKRLGEAGLLHKDALTVSGETVWDEVKDVV---------------NWNEDVILPAEKALTSSGGIVVLRGNLAPKGAVLKPSAASPHLLVHKGRAVVFEDIDDYKAKINDDNLDIDENCIMVMKNCGPKGYPGMAEVGNMGLPPKVLK--KGILDMV-RISDARMAGTA-YGTVVLHTSPEAAVGGPLAVVKNGDMIELDVPNRRLHLDISDEELARRLA-EWQPNH---DLPTSGYAFLHQQHVEGADTGADLDFLKGCR------


General information:
TITO was launched using:
RESULT:

Template: 5J85.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 3469 -19607 -5.65 -35.71
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -5.65
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.456

(partial model without unconserved sides chains):
PDB file : Tito_5J85.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5J85-query.scw
PDB file : Tito_Scwrl_5J85.pdb: