Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----MAKSFAINMAP---TNHGGMIPATQSRTSQ-----------EGNLFVRAGDGHMCPKCKCWSVVI-----KSHDHVIMDG---------KPVAYVGDKLSCGATIMPQQFHVVGDSGSPYSSAAPVQ-------NSLVEDKSNEIHKVQFKLVDVDTDQPLSAMLYEIHSKESGKLLVQGYTDKNGMT---AIYESEHTPESVQLITIDLSKPLDPL-
4EGD Chain:A ((27-253))GRNAQIKDTFNQTLKLYPTKNLDDFYDKEGFRDQEFKKGDKGTWIVNSEMVIEPKGKDM--ETRGMVLYINRNTRTTKGYYFISEMTPKDDEKRYPVKMEHNKIIPTKPLPNDKLKKEIENFKFFVQYGNFKDINDYKDGDISYNPNVPSYSAKYQLNNDDYNVQQLRKRYDIPTKQAPKLLLKGDGDLKGSSVGSRSLEFTFVENKEENIYFTDSVQYTPSE


General information:
TITO was launched using:
RESULT:

Template: 4EGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 645 41446 64.26 234.16
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 64.26
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.247

(partial model without unconserved sides chains):
PDB file : Tito_4EGD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4EGD-query.scw
PDB file : Tito_Scwrl_4EGD.pdb: