Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLLKVCTLLPCSLVIAACSVNSSSTPPTL-SSSTPQVQKSSIEI-SCQDLQN----PAYRQAVLNAINQIRQDSRQCGQQYFSAAKPLSWNNNLYQGANAHS-KDMANNNFLGHVGSTGLDLRARLKKYHMLSKANGENVASGQK---TLNEVLAKWIASPLHCS------NIMNPRYTEYAIACASDQSAKQRS-YWTQQFAGF--
5F3Q Chain:A ((2-193))----------------------SSTTLHNAMQYTAFDVLSSILNLMKADPLYDLLQDQEYEKNEFYGDSYLEERASSLVLKFLRKYEQIPFEM--YSGLRIHTVKNQTLGEIFDLLHLGDTKTFEKKKKGDLVESLIGGCVLLSQRENATLFLLFAHALIDYIFYHSSYIYFNANPPKLVKEEIITDIQNWFKDKLFYYRSSLEKYQT


General information:
TITO was launched using:
RESULT:

Template: 5F3Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 644 31902 49.54 193.35
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 49.54
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.232

(partial model without unconserved sides chains):
PDB file : Tito_5F3Q.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5F3Q-query.scw
PDB file : Tito_Scwrl_5F3Q.pdb: