Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceKCVIKRVFSDGSSVKIPAQPAQSTTISKQAVWVYGNCQPFPVVLNDGSKLSGEIETPAVTPVESVDEDDCFELDISGQR-
2JN4 Chain:A ((1-66))MKVMIRKTATGHSAYVAKKDLEELIVEMENPALWGG----KVTLANGWQLE----------LPAMAADTPLPITVEARKL


General information:
TITO was launched using:
RESULT:

Template: 2JN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 282 -13124 -46.54 -201.90
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -46.54
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.244

(partial model without unconserved sides chains):
PDB file : Tito_2JN4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2JN4-query.scw
PDB file : Tito_Scwrl_2JN4.pdb: