Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------------------------------------MNSFMQQSLKMKKILMMSMCGALLLTGCNKTSQQDQ-----TVSKEQKSTAQKTTEQRDSSCLQIMVAMHTINQNSKIEDLNQINEKLKTCVPSLKSEEQLKLIEASTA-----MYQRFLKQDYTDKTARAFEA---FGYAVLEQKQDLKKVIQSQK---------KLFAQLSPRDQYLLQHEGQAYIELLYQGEGMFTYRRQPNYLI-----DVFSKALPADQKEFLSRMAKDNQDIFYNDGALAVSWK--ELTERALFWEKFIQKYPK---------SYFINDAKLL---FNEYRYFIFFGLDNTPVSNEYAPNTWF-DPDALQQIRFLSTQSQSS--LAKP--------AQKFLKFIATPVDERNKQFKIDLTDENGQKKS-----TYQIVH-----EQLEQLLKFDSPWNTEIYRDCH-------------IDAVCIDTN-------------------------------------------
3L2P Chain:A ((1-579))HMRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSL-LTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVELSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK


General information:
TITO was launched using:
RESULT:

Template: 3L2P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1653 87454 52.91 237.65
target 2D structure prediction score : 0.48
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : 52.91
2D Compatibility (Sec. Struct. Predict.) : 0.48
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.280

(partial model without unconserved sides chains):
PDB file : Tito_3L2P.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3L2P-query.scw
PDB file : Tito_Scwrl_3L2P.pdb: