Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAEFSIIDQYFNRQSHPDVALGIGDDSALITPPPNQQLVICADTLVAGRHFPLETLSHAIGWKSVAVNLSDIAAMGAKPHSILLAISLP-QVDHEWLEGFSQGIYDCCNQFGVALIGGDTTQGPHLTITVTAMGWIE-TGKAVLRSGAKVGDYVCVSGQIGDAAYGLQHLGHS----------LQQRLDYPTPRCKLGEELKGL-ASSMIDVSDGLAQDLGHILKASKVGARLILEKLPVDPVLQQLEE-QQRWQYALAGGDDYELCFTITPQNYEKLLQKQ---LDVKITMIGQIVEQTKLTFEH-LGSDYPLQIHGYQHFA
3MCQ Chain:A ((8-309))-----LIQRYFRRAHP-SAVLGVGDDAALIQPSPGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNISDMAAMGAQPRWATLTIALPEA-DEDWISKFAAGFFACAAQFDIALIGGDTTRGP-LTISVQIMGETPPGA-SLLRSTARADDDIWVSGPLGDAALALAAIQGRYPLSDTELAACGKALHQPQPRVVLGQ-ALRGLAHSALDISDGLLADLGHILEHSQVGAEVWLKAIPKSEVVSAHSQEVAIQKMILSGGDDYELCFTASTQHRQQ-IADIGRQLSLDMAVIGRITDTQQLVIHGLDDAPLT----------


General information:
TITO was launched using:
RESULT:

Template: 3MCQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1509 -36157 -23.96 -127.31
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -23.96
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.496

(partial model without unconserved sides chains):
PDB file : Tito_3MCQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3MCQ-query.scw
PDB file : Tito_Scwrl_3MCQ.pdb: