Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPVMANYSTNDFKPGLKVMLDSNPCSIMENEYVKPGKGQAFNRVKLRNLKTGKVLEKTFKSGDTLEAADIVEVEMNYLYNDGEMWHFMDPESFEQIAADKTAMGDAAKWLKDDSNETCTIMLFNGVPLNVNAPNFVVLKVVETDPGVRGDTSGGGGKPAKLETGAVVRVPLFVQQEESVRVDTRTGEYLERA
1YBY Chain:A ((31-215))-----MISAGDFKNGVTFELDGQIFQVIEFQHVKPG--AAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKE--NEIVKVLSHKGNVFGIEPPNFVELEVTDT-------TATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV


General information:
TITO was launched using:
RESULT:

Template: 1YBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 778 -65211 -83.82 -370.52
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -83.82
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.514

(partial model without unconserved sides chains):
PDB file : Tito_1YBY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YBY-query.scw
PDB file : Tito_Scwrl_1YBY.pdb: