Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MTKKLSFKDYLFIGSMLFGLFFGAGNLIFPVHLGQEAGAATFWANLGFLVTGIGLPFLGVIAIGVSKSSGVYELAKRINQTYAMVFTILLYLVIGPFFALPRLATTSFEIGLAPFIDPSRQTLYLAIFSIVFFVLAWWFSRKPTKILDYVGKFLNPAFLVLLGALLLLAFLNPLGSVNQAPIQPNYQEHAFFTGFTQGYNTLDALAALAFGIIIVTTIQNMGVTKPAEIAKDTIKSGAISIILMGIIYTLLAYLGAMSLGSFALSENGGITLAQIADHYLGTYGSILL------AFIVILACLKTGIGLITAFAETFTDLFPQRNYAFFVALASILPCLAANVGLTNIIQFSLPVLMFIYPLAMTLILLV--LVGPLFKQRTAVYRMTTYFTLIASIFDGLNACPETIKQTPIVQNLLYVAESYLPFFKLGMGWIVPAVIGFVIGLIWSFAKKEEVAD 5X5Y Chain:F ((1-362)) ------MIVFRYLSREVLVTMSAVSAVLLVIIMSGRFIKYLAQAAQGLL----------------DPGSLFLIMAFRIPGFLQLILPLGLFLGI--LLAYGRLYLESEMTVLSAT------------------------GMSQKRLLGYT---MAPALLVAILVAWLSLFLAPQGINQFALLLNKQDTLTEFDTLVPGRF------------------QAMRDGTRVTYTEELSKDRG---ELAGIFISQKDLSNQERGISILVAEKGTQNIQADGSRYLILHNGYRYDGNPGQANYRAIQYDTYGVMLPKPDAVPTADLFGSDNPRYQAELQWRL---------------STPLLVFVVTLLAVPLSRVNPRQGRFLKLLPAILLYMGYLALLIAVRGQLDK-----GKIPM---------------AIGLWWVHGLFLAIGLLLFYWEPLRLKLAS

General information: TITO was launched using: RESULT: Template: 5X5Y.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 1360 -203311 -149.49 -592.74 target 2D structure prediction score : 0.51 Monomeric hydrophicity matching model chain F : 0.61 3D Compatibility (PKB) : -149.49 2D Compatibility (Sec. Struct. Predict.) : 0.51 1D Compatibility (Hydrophobicity) : 0.61 QMean score : 0.153

(partial model without unconserved sides chains): PDB file : Tito_5X5Y.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5X5Y-query.scw PDB file : Tito_Scwrl_5X5Y.pdb: