Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------------MREPDFLNHFLKKGYFKKHAKAVLALSGGLDSMFLFKVLSTYQKELEIELILAHVNHKQRIESDWEEKELRKLAAEAELPIYISNFSGEF------------SEARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRLIRGTRLRYLSGIKEKQVVGE-IEIIRPFLHFQKKDFPSIFHFEDTSNQENH-YFRNRIRNSYLPELEKENPRFRDAILGIGNEILDYDLAIAELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKFKSQYRHPIKNGYELIKEYQQFQICKISPQADEKEDELVLHYQNQVAYQGYLFSFGLPLEGELIQQIPVSRETSIHIRHRKTGDVLIKNGHRKKLRRLFIDLKIPMEKRNSALIIEQFGEIVSILGIATNNLSKKTKNDIMNTVLYIEKIDR
3VRH Chain:A ((1-309))MKCKFCSREAYIKIHYPKMYLCEEHFKEYFERKVSRTIERYKLLTKDERILVAVSGGKDSAVTAYVLKK----LGYNIECLHINLGISGYSEKSEEYAKKQCKLIGAPLHIVRIKEILGYGIGEVKTRRPPCSYCGLTKRYIMNKFAYDNGFDAIATGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPYTTLDMKGVLNELEEKRPG------------------------------------------------------------TKFNFVRGYLKKKKLF------------EPKECKIC------------------------------RMPSSGDIC-------------------------------------------------------AFCKFWGLKKEINFKVSSTD--------EEPFG


General information:
TITO was launched using:
RESULT:

Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1255 77326 61.61 302.05
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : 61.61
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.381

(partial model without unconserved sides chains):
PDB file : Tito_3VRH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VRH-query.scw
PDB file : Tito_Scwrl_3VRH.pdb: