Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLNQLDIIVSNVPQVCADLEHILDKKADYADDGFAQFTIG-SHCLMLSQNHLVPLENFQSGIIIHIEV---EDVDQNYKRLNEL---GIKVLHGPTVTDWGTESLLVQGPAGLVLDFYRMK
3SK2 Chain:A ((12-131))ITPNLQLVYVSNVERSTDFYRFIFKKEPVFVTPRYVAFPSSGDALFAIWSGGEEPVAEIPRFSEIGIMLPTGEDVDKLFNEWTKQKSHQIIVIKEPYTDVFG-RTFLISDPDGHIIRVCPL-


General information:
TITO was launched using:
RESULT:

Template: 3SK2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 384 -27659 -72.03 -244.77
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -72.03
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.629

(partial model without unconserved sides chains):
PDB file : Tito_3SK2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3SK2-query.scw
PDB file : Tito_Scwrl_3SK2.pdb: