Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------MEFVFNGFYTLI--SAVIVLLLGRFLVN-----RIDFLE--RYNIPEPVAGGLVAAVVSLLVHTFW-------------GYSIVFSSELQTSF-----MLVFFASIGLSANFMKLKEGGTA-LVIFLICVASFIVVQNAVGMSLATLLGLDPLIGLIA---GSITLTGGHGTAGAWGEILESQHGIQGAL-ALGMASATFGLIMCVIGGPLAKLLINRYSLA----------------QAKTNAEIQQRDTHVEQNSDDLAPFENP---HQVRLIT--ADNAITTLGMFAACLAFAEFMTGFSK-GTWFEL----PTFVWALGGGVILRNILESVLKV-DIFDRAIDVFGNASLSLYLAMALLSLKLWQLADLAGPLVVILVAQTL--------------------TMALYAAFVT-FRVMG----------KNYDAAVLAASHCGFGMG-----ATPTAVANMQAITNMYGPSHK--AFLIVPLCGAFFVDLINATVIQLMLKFIA
5L2R Chain:A ((64-604))DFHFSAIFQPTDPHHHQTEFAKVEGSEKYVEEVEVFGRQALKVNPEALTILAHRAFSDVHHFFRKDHLEGWRRAIEDPEASDNDRYVATTLLKNACIAAGRVLPSCQDTGTAIVLGKRGELCWTGGEDEKYLSKGIWNAYRYHNLRYSQTAALDMFKECNTGD---NLPAQLDLLAVPGSDYEFLFIAKGGGSANKAYLYQETKALLNPKSLRAFIEEKLKTLGTAACPPYHIALVIGGTSAEMTMKTVKLASCRYYDSLPTTGDKYGRAFRDPEWEKIVMEVAQKSGIGAQFGGKYFAHQARVIRLPRHGASCPVGLAVSCSADRQILAHINKSGIYIEQLEQNPAQYLPTSVKVDLKRPIDKVRQQLSQYPVGTRVMLNG--TLIVARDIAHAKIKEMMDNGEPLPEYMKTSPIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQSHGGSYITLAKGNRSKQVTDACKKHGGFYLGSIGGPAAILAKDSIKQVTCLAFPELGMEAVWKIEVEDFPAFIVVDDKGNDMYSKTLA


General information:
TITO was launched using:
RESULT:

Template: 5L2R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2013 -112928 -56.10 -278.83
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -56.10
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.167

(partial model without unconserved sides chains):
PDB file : Tito_5L2R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5L2R-query.scw
PDB file : Tito_Scwrl_5L2R.pdb: