Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKALPIAVAVVLGGAALVPVYYATQHPTTEVGHKADKNASPIQKISYVLGYEVAQQTPPELDTKAFVQGIHDVRNKQPSAYTQEDLKAAVAAYEKELQQKMQHQDKPEQAGTATDSADAQFLAENKTKAG---VKTTASGLQYIITKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQPVEFPL--NQVIPGWTEGLQLMKEGGKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK
4FN2 Chain:B ((69-209))----------------------------------------------------------------------------------------------------RIQADQTPED----LDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV-


General information:
TITO was launched using:
RESULT:

Template: 4FN2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 522 23614 45.24 174.92
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : 45.24
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.671

(partial model without unconserved sides chains):
PDB file : Tito_4FN2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4FN2-query.scw
PDB file : Tito_Scwrl_4FN2.pdb: